Yi Sun -- MATH, USC

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Yi Sun - Professor

PUBLICATIONS

Computational Biology, Biomaterials, Tissue Engineering
1.	E. Stahlberg, M. Abdel-Rahman, B. Aguilar, A. Asadpoure, R. Beckman, L. Borkon, J. Bryan, C. Cebulla, Y. Chang, A. Chatterjee, J. Deng, S. Dolatshahi, O. Gevaert, E. Greenspan, W. Hao, T. Hernandez-Boussard, P. Jackson, M. Kuijjer, A. Lee, P. Macklin, S. Madhavan, M. McCoy, N. Mirzaei, T. Razzaghi, H. Rocha, L. Shahriyari, I. Shmulevich, D. Stover, Y. Sun, T. Syeda-Mahmood, J. Wang, Q. Wang and I. Zervantonakis, Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation, Frontiers in Digital Health, 4, 1007784, 2022. [online]
2.	E. Bulanova, E. Koudan, J. Degosserie, C. Heymans, F. Pereira, V. Parfenov, Yi Sun, Qi Wang, S. Akhmedova, I. Sviridova, N. Sergeeva, G. Frank, Y. Khesuani, C. Pierreux, V. Mironov, Bioprinting of a functional vascularized mouse thyroid gland construct, Biofabrication, 9, 034105, 2017. [online]
3.	Yi Sun, Qi Wang, In-silico analysis on 3D biofabrication using kinetic Monte Carlo simulations, Advances in Tissue Engineering and Regenerative Medicine, 2, 00045, 2017. [online]
4.	Yi Sun, Xiaofeng Yang, Qi Wang, In-silico analysis on biofabricating vascular networks using kinetic Monte Carlo simulations, Biofabrication, 6, 015008, 2014. [online]
5.	Xiaofeng Yang, Yi Sun, Qi Wang, A phase field approach for multicellular aggregate fusion in biofabrication, Journal of Biomechanical Engineering, 135, 71005, 2013. [online]
6.	Yi Sun, Qi Wang, Modeling and simulations of multicellular aggregate self-assembly in biofabrication using kinetic Monte Carlo methods, Soft Matter, 9, pp.2172–2186, 2013. [online]

Traffic Flow, Pedestrian Flow
7.	Yi Sun, Kinetic Monte Carlo simulations of 1D and 2D traffic flows: Nonlocal models with generalized look-ahead rules, Transportation Research Part B: Methodological, 190, 103083, 2024. [online]
8.	Yi Sun, Changhui Tan, Accelerated Kinetic Monte Carlo methods for general nonlocal traffic flow models, Physica D: Nonlinear Phenomena, 446, 133657, 2023. [online]
9.	Nutthavuth Tamang, Yi Sun, Application of the dynamic Monte Carlo method to pedestrian evacuation dynamics, Applied Mathematics and Computation, 445, 127876, 2023. [online]
10.	Yi Sun, Changhui Tan, On a class of new nonlocal traffic flow models with look-ahead rules, Physica D: Nonlinear Phenomena, 413, 132663, 2020. [online]
11.	Yi Sun, Kinetic Monte Carlo simulations of bi-direction pedestrian flow with different walk speeds, Physica A: Statistical Mechanics and its Applications, 549, 124295, 2020. [online]
12.	Yi Sun, Simulations of bi-direction pedestrian flow using kinetic Monte Carlo methods, Physica A: Statistical Mechanics and its Applications, 524, pp.519–531, 2019. [online]
13.	Yi Sun, Kinetic Monte Carlo simulations of two-dimensional pedestrian flow models, Physica A: Statistical Mechanics and its Applications, 505, pp.836–847, 2018. [online]
14.	Yi Sun, Ilya Timofeyev, Kinetic Monte Carlo simulations of 1D and 2D traffic flows: Comparison of two look-ahead rules, Physical Review E, 89, 052810, 2014. [online]
15.	Cory Hauck, Yi Sun, Ilya Timofeyev, On cellular automata models of traffic flow with look-ahead potential, Stochastics and Dynamics, 14, 1350022, 2014. [online]

Numerical PDE, Multiscale Modeling and Simulation
16.	Jingwei Sun, Jun Li, Yonghong Hao, Cuiting Qi, Chunmei Ma, Huazhi Sun, Negash Negashaw, Gurcan Comert, Yi Sun, and Qi Wang, Approximation of the boundary-to-solution operator for the groundwater transport equation in a Toth basin, Advances in Water Resources, 176, 104448, 2023. [online]
17.	Pierre Gremaud, Yi Sun, Numerical study of singularity formation in relativistic Euler flows, Communications in Computational Physics, 16, pp.348–364, 2014. [online]
18.	Yi Sun, Russel Caflisch, Bjorn Engquist, A multiscale method for epitaxial growth, SIAM Multiscale Modeling & Simulation, 9, pp.335–354, 2011. [online]
19.	Weinan E, Bjorn Engquist, Yi Sun, Heterogeneous multiscale methods with application to combustion, in Turbulent Combustion Modeling: Advances, Trends and Perspectives (T. Echekki and E. Mastorakos eds.), Springer, pp.439–459, 2011. [online]
20.	Yi Sun, Bjorn Engquist, Heterogeneous multiscale methods for interface tracking of combustion fronts, SIAM Multiscale Modeling & Simulation, 5, pp.532–563, 2006. [online]
21.	James M. Hyman, Shengtai Li, Yi Sun, A hybrid multiscale method for coupling discrete and continuum models, LANL Technical Report (LA-UR-05-8248), 2005. [online]
22.	Pingwen Zhang, Yi Sun, Haiyan Jiang, Wei Yao, Multiscale methods for inverse modeling in 1-D MOS capacitor, Journal of Computational Mathematics, 21, pp.85–100, 2003. [online]

Computational Neuroscience
23.	Yi Sun, Aaditya V. Rangan, Douglas Zhou, David Cai, Coarse-grained event tree analysis for quantifying Hodgkin-Huxley neuronal network dynamics, Journal of Computational Neuroscience, 32, pp.55–72, 2012. [online]
24.	Douglas Zhou, Yi Sun, Aaditya V. Rangan, David Cai, Spectrum of Lyapunov exponents of non-smooth dynamical systems of integrate-and-fire type, Journal of Computational Neuroscience, 28, pp.229–245, 2010. [online]
25.	Yi Sun, Douglas Zhou, Aaditya V. Rangan, David Cai, Pseudo-Lyapunov exponents and predictability of Hodgkin-Huxley neuronal network dynamics, Journal of Computational Neuroscience, 28, pp.247–266, 2010. [online]
26.	Douglas Zhou, Aaditya V. Rangan, Yi Sun, David Cai, Network-induced chaos in integrate-and-fire neuronal ensembles, Physical Review E, 80, 031918, 2009. [online]
27.	Yi Sun, Douglas Zhou, Aaditya V. Rangan, David Cai, Library-based numerical reduction of the Hodgkin-Huxley neuron for network simulations, Journal of Computational Neuroscience, 27, pp.369–390, 2009. [online]