Mathematics and Biology: Modeling Spatial Groups
June 25 - July 1, 2006

Dr. Matt Miller
miller@math.sc.edu
Department of Mathematics
University of South Carolina

  • Information about the course and me (link to the GSSM SSP blurb)
  • Matlab scripts
    Don't worry; we will not use all of these!! They were originally written (mostly restricted to two dimensional groups) by Ian MacFarland and Steve Viscido at the University of Washington, Seattle, and by Jim Work, Mary Ellen Kustin, and Matt Miller (three dimensional groups and test configuarations) at the University of S. Carolina, Columbia. The scripts for the 2D case have been updated by Jim Work (summer, 2005).
  • 2D groups
  • addIndex2d.m
  • allEquid2d.m
  • allNN2d.m
  • angleSep2d.m
  • burrowRun2d.m
  • centerOfMass2d.m
  • circleFish2d.m
  • clarkEvans2d.m
  • clumped2d.m
  • compSwarm2d.m
  • detailedPlot2d.m
  • diameter2d.m
  • dist2d.m
  • dist_point_to_line.m
  • evenGroupCenters2d.m
  • evenGroupCenters2dV02.m
  • evenGroups2d.m
  • evenPtsSqr2d.m
  • expanseFcn2d.m
  • expanseFcn2dV02.m
  • findAngle2d.m
  • findGroups2d.m
  • findNN2d.m
  • fixAngle2d.m
  • fuzzySwarm2d.m
  • hexGroups2d.m
  • interIndivDist2d.m
  • match.m
  • meanCrowd2d.m
  • meanGroupSize2d.m
  • meanNND2d.m
  • numGroups2d.m
  • perim_indivs.m
  • perimIndivs2d.m
  • pointPlot2d.m
  • randGroupSize2d.m
  • randomGroups2d.m
  • randPtsNormal2d.m
  • randPtsSpaced2d.m
  • remIndex2d.m
  • ripleysK2d.m
  • roundGroups2d.m
  • shape2d.m
  • shapes2d.m
  • simplePlot2d.m
  • spread2d.m
  • squareEvenGroups2d.m
  • squareGroups2d.m
  • stragglers2d.m
  • swarming2d.m
  • test2d.m
  • unevenGroupCenters2d.m
  • unevenGroups2d.m
  • vorareas.m
  • voronoiGenerator2d.m
  • vorPlot2d.m
  • 3D groups
  • voronoiHighlight3d.m
  • voronoiGenerator3d.m
  • vorPlot3dV01.m
  • vorPlot3dV02.m
  • vorPlot3dV03.m
  • vorBlackAndWhite3d.m
  • vorHighlightPoints3d.m
  • volumeArea3D.m
  • remIndex3d.m
  • shape3d.m
  • simplePlot3d.m
  • sphereFish3d.m
  • interIndivDist3d.m
  • influence3d.m
  • allNN3d.m
  • meanNND3d.m
  • sortByDist.m
  • addIndex3d.m
  • randFish3d.m
  • randMovement3d.m
  • findGroups3d.m
  • General tools
  • Scripts from 2004

    • Last modified: June 23, 2006