The main menu of the program looks like this:
     Choose from this menu:
     (1) Generate random binary tree
     (2) Generate binary tree from a set of quartet splits (DCTC algorithm)
                         default input file:
     (3) Generate distance matrix from sequences on leaves
                        default input file: seq.txt
                        default output file: dist.txt, nhdist.txt
     (4) Generate binary tree from sequences (DCM algorithm)
                        default input file: seq.txt
     (5) Quit

You have to type an integer from 1 to 5 and hit Return. 5 will exit the program. The other choices will give you the opportunity to make some computation.

Click to the menu points to see what are they doing .


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